Chengeer Lee
Chengeer Lee Podcast
The Cognitive Engineer - Part 1: How Intelligent People Build Intelligent Prisons
0:00
-49:49

The Cognitive Engineer - Part 1: How Intelligent People Build Intelligent Prisons

A Framework for Understanding Mental Imprisonment and the Methodology for Systematic Belief Demolition


Introduction: The Problem with Invisible Code

Most people are running on mental software they never consciously installed.

They operate from beliefs, assumptions, and frameworks that were programmed into them by family, culture, education, and circumstance - yet they experience these inherited mental patterns as absolute truth. I call this phenomenon “living in someone else’s operating system.”

The tragedy is that most high-performers, despite their analytical sophistication, remain completely unconscious of the arbitrary nature of their core beliefs about success, career, identity, and life itself. Just this week, I had a session with a brilliant strategy consultant who perfectly exemplified this dynamic. Here was someone with exceptional analytical capability, trapped in a mental framework that was systematically undermining his performance and well-being. Despite knowing intellectually that his beliefs were “arbitrary,” he remained emotionally enslaved to them.

This is the paradox I encounter repeatedly in my coaching practice: the gap between intellectual awareness and experiential liberation.

He could clearly articulate that his beliefs about career progression, timelines, and success were “just thoughts” - yet these same beliefs controlled every major decision in his life. He was imprisoned by ideas he himself recognized as arbitrary.

This article presents the complete methodology I’ve developed over years of working with elite operators, executives, and high-performers who possess extraordinary analytical capability but remain trapped in inherited mental frameworks. I operate as a cognitive engineer - part debugger, part systems architect, part demolition expert.

My methodology operates at four distinct levels: surfacing invisible code, pressure-testing mental constructs, installing new operating systems, and integrating through embodiment. But before we dive into the technical process, we need to understand the fundamental mechanism by which mental imprisonment occurs.

Part I: The Mechanics of Mental Imprisonment

The Installation Mechanism: How Beliefs Become Code

Limiting beliefs get installed through repetition in emotionally charged contexts. It’s not intelligence that creates them - it’s identification.

When someone absorbs a belief like “success takes time” or “I need to prove my worth” or “there are levels to this,” what’s actually happening is that the nervous system is prioritizing safety over truth. The brain says, “If I believe this, I’ll belong. If I question it, I might be isolated.”

So even high performers, even people who run billion-dollar companies, they’re still unconsciously optimizing for acceptance, not freedom.

The mechanism is simple: repetition, emotional charge, authority figure. That’s the installation code.

The moment a child feels powerless and someone older, more confident, tells them “That’s just how the world works,” the belief doesn’t pass through logical scrutiny. It installs directly into the subconscious as a rule. Then that rule runs silently. The person can be thirty-five, articulate, analytical, self-aware - but they’re still living out a seven-year-old’s fear of rejection or failure.

Layer 1: The Parental Operating System

We learn from the external world, and this is how we understand who we are. First, we start noticing differences at the physical level - someone’s shorter, someone’s taller, someone’s wider, someone’s thinner. Someone’s skin is darker, someone’s lighter. We understand our differences through these visible distinctions.

We start to combine our picture of the world through this code. The primary code is installed through our own ability to observe the world. The first people we observe are parents. We observe what they do. What kind of mental models do they have? We don’t necessarily understand how they think, but we understand how they behave. What’s their energy? What’s their response? How do they approach things?

Then when we grow up a little bit older, we start listening to them. This is the first authority figure - the voice of a parent in our head, telling us that something is right, something is wrong, something is correct, something is incorrect.

We associate some actions with pain because we get punished, and we associate some actions with pleasure because we get rewarded either by words of affirmation or by an actual reward. This creates the foundational reward-punishment circuitry that will govern decision-making for decades.

Layer 2: The Institutional Brainwashing System

Then we go into the schooling system. That’s a huge layer of brainwashing because that’s the system that creates this same reinforcing mechanism of grading and ranking and leveling. That’s where we learn this from.

We study the same subjects and we get different grades depending on our aptitude, but we are supposed to do well in all the different subjects, regardless of our natural gifts and aptitudes. Traditional school is actually not adapted at all to human nature. I understand because it’s education at scale, so it’s a different kind of conversation how to solve this problem. Technology is enabling individual education and it’s progressing much faster, and with AI, it’s going to be even more personalized - right now not only for young people but for adults as well.

But here’s what matters: this is where we get ideas, and especially this paradigm that is installed very deeply in our mind - that there is a correct answer and there is an incorrect answer.

We extrapolate this paradigm everywhere in life. There is a correct way of doing something and there is an incorrect way of doing something. If we do something correctly, we get rewarded, and if we don’t, we get punished.

Rarely do we question if that is actually a belief that serves us well in life.

Layer 3: The Religious-Cultural Framework

Another institutional layer where this paradigm comes through is the institution of church or religious framework. In ancient times, it was actually a mechanism that controlled chaos.

Sleeping with other men’s wives is prohibited because there’s going to be a lot of undesired children. Undesired children become the destitute, the criminals, and if there’s a high concentration of criminals, the whole society falls into chaos. Very simple mechanism.

This is why principles like “don’t kill, don’t steal, don’t commit adultery” exist in religious texts. All these principles are actually pretty grounded - if you install them in your life, a lot of things can get done right.

But we’re not going to go too deep into religion. All of this I’m saying to give you an example of where this paradigm of right or wrong comes from. There’s this notion and concept of God: you do the right stuff, you get rewarded, you go to heaven. Depending on religion, pick your reward. If you don’t do right, you’re going to hell, you’re going to burn - pick your punishment.

We pick up and install this paradigm. We get programmed with it.

There is a certain way of living that’s considered right, and there is a certain way of living that’s considered wrong. Whatever we derive for ourselves becomes our system of beliefs that we then project onto others, and we suffer when other people do not necessarily share our beliefs.

The Duality Trap

This is how duality manifests itself. We think in polarity - zeros and ones, yes or no, black and white. We tend to fall into these bipolar ends of the spectrum, but that’s not necessarily how life is.

On the contrary, life is that way for us because that’s how we believe it.

That’s a meta-principle to understand: life is not a certain way. Everything that you call life is happening within your mind.

Whatever is happening in your mind is your own perception. What you believe, you experience. Your experience will reinforce your beliefs. All beliefs are just thoughts repeated 100,000 times until they’re integrated into subconsciousness.

Because they are so deeply integrated, they sit there very, very deep without ever questioning them. They quietly and silently drive our life.

In my sessions, I’ll often see someone say, “I just feel like I need to be more established before I can pivot,” and I’ll stop them. “Who said that?”

They pause. You can feel the system glitch. Because the conscious mind can’t locate the source - and that’s where the unraveling begins.

The Phantom Authority Phenomenon: The Invisible Rule-Makers

The Phantom Authority is the invisible rule-maker in the mind. It’s the voice that says, “You can’t do that yet,” but when you ask “Who said?” - there’s no answer.

It’s not your father. It’s not your boss. It’s not society. It’s a composite hallucination built from fragments of others’ approval.

I’ve seen clients governed by these ghosts for decades. One believed they had to earn a certain income before exploring creative work - even though no one in their life explicitly told them that. Another wouldn’t allow themselves to rest until they’d achieved some undefined “enoughness.”

When I ask, “Whose rule is that?” they blink, like waking from a trance. Because they realize it’s no one’s. That’s the nature of phantom authority - it has no origin, only continuity. It persists because it’s never questioned.

And the moment you expose it, it collapses. It can’t survive scrutiny.

Once someone truly sees that the voice telling them what to do doesn’t belong to anyone real, they feel this deep mix of anger, relief, and laughter. The spell breaks.

The Intelligence Paradox: Why Smart People Build Smarter Prisons

The paradox is that smart people build smarter prisons. The more analytical the mind, the more elegant the rationalization.

A strategy consultant can map out every causal link in a market but never question the internal logic of their own suffering. They’ll optimize frameworks, not freedom.

Why? Because intelligence, when unintegrated, becomes self-reinforcing. It builds castles of logic to defend emotional avoidance. It uses analysis to stay safe from feeling.

Freedom doesn’t come from analysis - it comes from awareness. Awareness doesn’t need to explain itself.

The most brilliant people I’ve coached often have the hardest time letting go because they’ve built an identity around being the one who “understands.” But the mind can’t think its way out of itself. It can only dissolve into direct seeing.

So the paradox is: the smarter you are, the more convincing your illusions become - until you realize intellect is just another form of control.

The Sophisticated Explanation Trap

Very simple. An intelligent mind, an intellectual mind, can create very sophisticated explanations for absolutely everything.

Richard Feynman said: “The most important thing is not to fool yourself, and you are the easiest person to fool.”

The more intelligent you are, the more sophisticated your mind is as a mechanism, and the more sophisticated are the explanations for why something is the way it is and for why something isn’t. Why you can do something and why you cannot. You can explain yourself and convince yourself of absolutely anything.

That’s the fallacy of the human mind.

We also believe that the smarter we become, the more high-functioning we are, we believe that we are the only ones who know how everything works. But is that true? That needs to be challenged.

We don’t necessarily know and see everything. As a rule of thumb, while you’re going into this investigation, I would probably just keep it as a reminder:

“Every thought is a lie. Every belief is untrue. Everything your mind is telling me right now - start with a place of doubt: What if everything I know, everything I believe is absolute and total bullshit? What if?”

Only through that doubt can you truly, with honest open sincere heart, go into this investigation and start dissecting the content of your mind to truly try to understand where this stuff is coming from. Is it supposed to be there? Does it serve you or does it not?

Part II: The Deconstruction Methodology

The Belief Application Framework

I conceptualize beliefs as software applications running on the hardware of the brain. Like any software, beliefs can be:

  • Audited (examined for effectiveness and origin)

  • Upgraded (replaced with more functional versions)

  • Deleted (removed when they no longer serve)

  • Installed (consciously chosen based on desired outcomes)

The analogy I make with my clients is this: I’m going to take your phone - but your phone is your mind - and I’m going to start looking through all these applications, all this data that you keep in there, primarily through the apps.

All beliefs are like applications.

I’m going to start poking them and ask: “Why is this application there? What is the purpose that it serves?”

All applications can be uninstalled or upgraded. Have you asked yourself, “What if?” Like, yes, this application was serving a particular purpose before, but you haven’t updated it in quite a while.

Maybe there is Slack, and you’re using Microsoft Teams. Or not even Microsoft Teams - you’re still using mail. Or maybe not mail - maybe you’re still using pigeon mail. That’s how archaic and deeply ingrained that belief is and how deeply inefficient it is.

Imagine that analogy. And imagine even that some applications, some beliefs sitting in this mind operating system - they are absolutely not necessary. On the contrary, they create the very inhibition that you’re trying to solve.

The Architecture of a Cognitive Engineering Session

A cognitive engineering session is like debugging consciousness. The process is surgical - not therapeutic, not motivational. It’s diagnostic.

We begin by identifying friction: where is the system producing unnecessary effort? That’s the entry point. Then I trace linguistic patterns - the hidden code inside the way they speak.

Whenever someone says “I have to...” or “I should...” or “I need to...”, I know we’re dealing with inherited programming. The conscious mind reveals the unconscious through syntax.

The Diagnostic Process

There are several ways to surface invisible mental code:

1. Observation of Speech Patterns

This is a micro-pattern that I’m observing. People whose mind is racing - their speech is racing. That’s the number one thing we need to address. We need to slow down.

We cannot control what we don’t understand. We don’t understand what we don’t observe, so we’ve got to observe first. We’ve got to start listening to what the hell is going on, what is coming out of our mouth.

2. The Metacognitive Mirror

I serve as a metacognitive mirror. I observe, and my job is to be the external source of awareness - feeding it back, saying exactly as it is but probably giving it a different angle or different color or different perspective.

Sometimes all it requires is just repeating words back so that people could hear how it sounds. Many times, things start breaking apart the moment people say them out loud because they understand the absurdity of what they’ve just said.

3. Writing as Distance Creation

Writing gets it all out. That’s how you create distance between your thoughts and yourself. You become aware of your thoughts, and this dissociation process happens because your thoughts take a physical form. You literally get them out of your system.

Then you look at the piece of paper and realize: “Aha, this is not me. This is just stuff inside my head.”

Then you can organize it, reorganize it, delete it, and improve your thinking systems over time. I’m not only coaching but I’m also training people on how to utilize technology to capture their mind in order to investigate it.

This is the purpose of AI - it’s this perfect metacognitive mirror without distortion of fears, anxieties, personalities, beliefs, limiting blind spots and stuff like that. But you have to know how to use it. If you don’t know how to use it, AI in the hands of a user who doesn’t know how to use it is useless.

4. Recording and Transcript Analysis

We record the session, download the transcript. You can listen to the recording and listen to what the hell you’re saying.

You take the transcript, you process it, and you start seeing patterns. Using AI, you can recognize patterns. You start seeing thinking patterns and belief patterns that are emerging. Investigate them and investigate their validity. What’s underneath those beliefs? Do they have a foundation?

The Question Progression

From there, I apply pressure through inquiry:

“Who said that’s true?”

“If you didn’t believe that, what would change?”

“What’s the cost of keeping this rule alive?”

“Where is this coming from?”

“Why are you so attached to this way of thinking?”

You can hear when a belief is ready to collapse - there’s a pause, a nervous laugh, or silence. That’s the moment when awareness meets resistance.

The goal isn’t to convince them of a new belief - it’s to return them to direct choice. Once awareness is restored, the system self-corrects.

The Moment of Collapse: When Belief Systems Crumble

When a belief system collapses, it’s not intellectual - it’s visceral. The body trembles, the eyes soften, breathing shifts. You can see the nervous system recalibrating to freedom.

They’ll often say, “Wait... what?” It’s disorientation - the moment the mind loses its anchor. The belief that once defined their safety suddenly dissolves, and for a split second, they touch pure groundlessness.

This is where most teachers rush to reassure. I don’t. I hold the silence. Because this moment - the void - is where real transformation happens.

It’s terrifying and beautiful. You see the mind realizing it’s not in control, and at the same time, you see consciousness relax into itself.

My role isn’t to replace the old software - it’s to help them see that they don’t need software at all.

The First Level of Collapse

The first collapse happens when people start clearly seeing their own signals:

  1. They cannot explain things in a very logical, cohesive way. If they can’t explain it, they realize they don’t understand it themselves.

  2. They can’t reconcile concepts logically. Once we get to the true foundational principles, they realize that indeed there is no ultimate foundation.

For example: external reality and internal reality. There’s no such thing as external or internal. There’s only what you know, and what you know is the reality of your own mind.

Eight billion people - they don’t know what the external world looks like. The only thing that you experience is the reality of your own mind. And that’s your ultimate reality.

You are the prisoner of your own mind and you always will be. You’re the only one to experience your reality and no one else will ever understand what it’s like to be you. Just like you will never understand what it’s like to be others and what they’re actually going through.

It’s not rocket science. It just requires a little bit of observation.

From there, you start understanding: “Okay, if that’s me locked within this black room with a couple of windows I call eyeballs from which I’m looking outside in the world, but actually the experience of the world is happening within that room too - then why am I suffering? Who is creating that suffering? What’s the reason of my suffering?”

You start looking around and investigating the furniture, asking yourself: “Who put this stuff here in the corner? Why does it smell? Why is it rotting? Why is there moss on my walls?”

If you truly start investigating and you’re not okay with the status quo, you start cleaning up.

People say, “Your body is your temple,” and it’s very easy to take care of it - it’s physical, visible, tangible. You can see physical transformation. Inner transformation isn’t visible.

But if your body is your temple, your mind is your garden.

You start taking care of your garden. It requires watering. You have to water the right seeds (the productive thoughts and beliefs), and you have to weed out the stuff that’s no longer serving you. Not only is it no longer serving you - it’s poisoning the well.

The Ultimate Collapse: Identity Dissolution

The true collapse happens when people realize that the identity they believe themselves to be is a full fabrication of the mind. It never existed. It’s just an entanglement of different stories, past memories, thoughts, and future thoughts.

Identity is a thought. Whatever you poke at - there’s nothing really to hold on to. It’s always a phantom of a thought. All this entanglement of stories and thoughts and perceptions and conceptions and beliefs and hopes and dreams and fears - it all becomes that. The ego, really.

The collapse happens when the person starts seeing that ego is completely unreal and whatever they believe themselves to be is completely unreal. It never existed. It was a dream.

And that’s what’s called awakening. Awakening is simply starting to see the unreality of thought and the unreality of the self.

Rebuilding from First Principles: Conscious Reconstruction

After collapse, reconstruction begins. But not as “new beliefs” - as conscious design.

I start with this: “If you were to design your mind from scratch, knowing what you now know - what would you keep? What would you delete?”

That question activates authorship. They realize they can architect reality consciously, not reactively.

We still need egos. Even after collapse, this process is already launched. There’s going to be inertia. There’s going to be momentum. It’s not like ego is going to disappear.

I use my ego right now in order to communicate with the world. Ego becomes an interface. It’s a tool, a costume, a suit - something that you use in order to interact with the physical world and communicate with other people.

Because that’s the only form we have. We can’t read each other’s minds. We have only communication, touch, communion, community.

The First Principles Foundation

From the metaphysical realm of metacognition, in the realm of the mind, in this spiritual realm - that’s what I’m calling breaking down to first principles.

In math, it’s zeros and ones and the basic operators of math. In life, in reality, those first principles are your direct experience.

Understanding and seeing the stuff that’s been staring you in your face all your life - that’s absolutely obvious. The moment you realize it, you start crying and laughing at the same time.

Those are tears of regret: “How many years were wasted in the dream?”

And tears of relief from the realization that it’s no longer required to live within the dream. That you can actually be free. That you can live as an awakened being unbound by that noise of the mind.

From there starts the work of reconstructing the mind from first principles, building it all up based on truth.

Truth is truth - that’s why it’s called truth. Truth is the same ultimate truth for absolutely everyone.

If the Bible says one truth, and the Quran says another truth, and the Torah says yet another truth - these are not truths. These are guideposts, signposts on the road. They point to the same thing, but they are not the truths themselves.

Because if they were truths, there wouldn’t be conflict. There would be only love and understanding. But we’ve been killing each other for so-called God, for so-called truth, since the beginning of times.

Truth is universal. It’s primal. Everyone’s coming from one place, and everyone can agree on that. That is the final truth.

The Reconstruction Framework

Then we rebuild from first principles:

Truth: What do you know directly, without assumption?

Utility: What actually works for your life’s architecture?

Alignment: Does this belief expand or contract your freedom?

The reconstruction phase is about precision. We’re not creating affirmations - we’re engineering operating systems. Every belief must earn its existence through conscious awareness.

From there, once you grasp these truth principles, you can start reconstructing and rebuilding your so-called ego and identity. You don’t even need to do it intentionally - it’s just going to happen itself. It’s a natural, organic process.

When I ask the question, “Who are you?” people start asking this question themselves: “Who am I?”

You are what remains when everything you are not dies away.

That is the process of integration, which is actually disintegration. That’s why I call the process of integration the process of disintegration.

Everything that you believe yourself to be - your name, your body, your emotions, your thoughts, your profession, your accomplishments and attainments, your childhood traumas, your beliefs, thoughts, hopes, dreams, expectations - whatever there is inside your head that you believe is true, when that dies away, the true self shines through.

But there is no true self. The self itself is false. Once the false self dies away, truth shines through your being. Your natural, innate being is truth and love and peace.

The Liberation Process

From there, the process of reconstructing happens because think about it: we are tormented by our desires, and our desires create our expectations.

But whose desires are these? Is it really what we want? How many of those desires are actually true? How many are imposed?

Those desires create certain expectations - which is again nothing but an illusion, an imaginary movie of how the future must unfold. Then when reality unfolds not in that way, we resist it and we struggle and we suffer.

Imagine if all of that is gone.

Whatever you call your past, that identity that’s been constructed through all the past stories, those experiences - which are not actually the experiences but the interpretation of those experiences, which are nothing but stories in the present moment.

Everyone who wronged you, everyone you feel resentment about, everyone you didn’t forgive, everyone who is supposedly the reason you are the way you are - what if all of that is gone?

What if all you are is just infinite, boundless emptiness? Effortless being?

I’m not saying the mind goes away. On the contrary, the mind starts being utilized the way it’s supposed to. You can still use the mind to build projections, to build plans, but you’re no longer attached to them. There’s no “you” who is attached to them.

That’s why there are no longer expectations. And when there are no expectations, there is no suffering. There is no resistance. There’s no anger. There’s no trying to fix people so they are supposed to be some way.

Once you understand the true nature of your own mind, you’ll understand the nature of absolutely every mind. There will be nothing but compassion towards other humans because you will see the depth of their ignorance, just like the way you were ignorant yourself before.

There is no responsibility - or there’s nothing to ask from people who are asleep. It’s like being mad at a dog that you left home alone and it destroyed everything in your home. There is no point of being angry at this being because this being is at the level of consciousness that’s not allowing it to be self-aware.

That’s how most people are operating: they’re not self-aware. Because there’s no awareness, they live as the self. They don’t live aware of the self - they live as the self. That ego, that identity, that concept, the entanglement of thoughts.


This concludes Part 1 of The Cognitive Engineer series. We’ve explored the mechanics of mental imprisonment - how beliefs get installed, the phantom authorities that govern our lives, and why intelligent people create the most sophisticated mental traps.

In Part 2, we’ll dive deeper into the practical application: systematic belief demolition, conscious reconstruction, and how to become the architect of your own mental operating system. We’ll examine real coaching sessions and walk through the precise methodology for engineering freedom from inherited programming.

The path from mental imprisonment to metacognitive sovereignty is available. The question is whether you’re ready to question everything you think you know about yourself.


This Substack is reader-supported. To receive new posts and support my work, consider becoming a free or paid subscriber.

Discussion about this episode

User's avatar

Ready for more?